Search results for "model [interaction]"
showing 10 items of 1495 documents
Transcriptional Activity and Nuclear Localization of Cabut, the Drosophila Ortholog of Vertebrate TGF-β-Inducible Early-Response Gene (TIEG) Proteins
2011
Background Cabut (Cbt) is a C2H2-class zinc finger transcription factor involved in embryonic dorsal closure, epithelial regeneration and other developmental processes in Drosophila melanogaster. Cbt orthologs have been identified in other Drosophila species and insects as well as in vertebrates. Indeed, Cbt is the Drosophila ortholog of the group of vertebrate proteins encoded by the TGF-s-inducible early-response genes (TIEGs), which belong to Sp1-like/Kruppel-like family of transcription factors. Several functional domains involved in transcriptional control and subcellular localization have been identified in the vertebrate TIEGs. However, little is known of whether these domains and fu…
Rapid nucleus-scale reorganization of chromatin in neurons enables transcriptional adaptation for memory consolidation
2020
AbstractThe interphase nucleus is functionally organized in active and repressed territories defining the transcriptional status of the cell. However, it remains poorly understood how the nuclear architecture of neurons adapts in response to behaviorally relevant stimuli that trigger fast alterations in gene expression patterns. Imaging of fluorescently tagged nucleosomes revealed that pharmacological manipulation of neuronal activity in vitro and auditory cued fear conditioning in vivo induce nucleus-scale restructuring of chromatin within minutes. Furthermore, the acquisition of auditory fear memory is impaired after infusion of a drug into auditory cortex which blocks chromatin reorganiz…
DNA chips for yeast biotechnology. The case of wine yeasts.
2002
The yeast Saccharomyces cerevisiae is one of the most popular model organisms. It was the first eukaryote whose genome was sequenced. Since then many functional analysis projects have tried to find the function of many genes and to understand its metabolism in a holistic way. Apart from basic science this microorganism is of great interest in several biotechnology processes, such as winemaking. Only global studies of the cell as a whole can help us to understand many of the technical problems facing winemaking. DNA chip technology is one of the most promising tools for the analysis of cell physiology. Yeast has been the model organism for the development of this technique. Many of the studi…
A genomic view of mRNA turnover in yeast
2011
The steady-state mRNA level is the result of two opposing processes: transcription and degradation; both of which can provide important points to regulate gene expression. In the model organism yeast Saccharomyces cerevisiae, it is now possible to determine, at the genomic level, the transcription and degradation rates, as well as the mRNA amount, using DNA chip or parallel sequencing technologies. In this way, the contribution of both rates to individual and global gene expressions can be analysed. Here we review the techniques used for the genomic evaluation of the transcription and degradation rates developed for this yeast, and we discuss the integration of the data obtained to fully an…
DSL Tool Development with Transformations and Static Mappings
2009
A tool development framework for domain-specific languages combining mapping and transformation based approaches is proposed in this research project. The combination of both approaches permits to use advantages and eliminate disadvantages as far as possible. First results are described including draft architecture for the framework implementing proposed ideas. A sketch of mapping definition facilities is presented. Initial implementation proposals are described as well. A template based graphical generation language Template MOLA for implementation algorithm description is introduced.
Overexpression of Human and Fly Frataxins in Drosophila Provokes Deleterious Effects at Biochemical, Physiological and Developmental Levels
2011
10 pages, 5 figures. 21779322[PubMed] PMCID: PMC3136927
Dietary Conversions and Forms of Life
2019
This paper regards the emergence of forms of life in the field of food and dietary choices. It aims at connecting meat-free diets with the notion of form of life, especially focussing on the moment of “conversion” from an omnivourous diet to vegetarianism or veganism. The semiotic mechanisms of transitions between forms of life connected to dietary regimens will be highlighted. How does the conversion happen? Like in spiritual and religious discourses, the conversion is often a striking event, a punctual episode in the subject’s life, affecting particularly his/her pathemic and sensorial spheres. In other cases, conversions imply complex and slow processes, affecting pragmatic and cognitive…
Homeostasis in the Central Dogma of molecular biology: the importance of mRNA instability
2019
Cell survival requires the control of biomolecule concentration, i.e. biomolecules should approach homeostasis. With information-carrying macromolecules, the particular concentration variation ranges depend on each type: DNA is not buffered, but mRNA and protein concentrations are homeostatically controlled, which leads to the ribostasis and proteostasis concepts. In recent years, we have studied the particular features of mRNA ribostasis and proteostasis in the model organism S. cerevisiae. Here we extend this study by comparing published data from three other model organisms: E. coli, S. pombe and cultured human cells. We describe how mRNA ribostasis is less strict than proteostasis. A co…
A relational model for unstructured documents
1987
The logical structure of a document is usually a tree in which the order of the nodes is important at least at some level of the tree. We call a document unstructured if its structure is a single-level ordered tree. The purpose of this paper is to present a many-sorted algebra for handling unstructured documents. The documents in the model are represented by relations. An algebra for handling documents of one type can be extended to an algebra for handling documents of several types. Further, an algebra for handling documents can be extended by the relational algebra for handling documents and relations in a common algebra. The model of this paper can be regarded as a part of a general docu…
Capturing colorectal cancer inter-tumor heterogeneity in patient-derived xenograft (PDX) models
2019
Patient‐derived xenograft (PDX) models have become an important asset in translational cancer research. However, to provide a robust preclinical platform, PDXs need to accommodate the tumor heterogeneity that is observed in patients. Colorectal cancer (CRC) can be stratified into four consensus molecular subtypes (CMS) with distinct biological and clinical features. Surprisingly, using a set of CRC patients, we revealed the partial representation of tumor heterogeneity in PDX models. The epithelial subtypes, the largest subgroups of CRC subtype, were very ineffective in establishing PDXs, indicating the need for further optimization to develop an effective personalized therapeutic approach …